About   Help   FAQ
rs239643732 SNP Detail
Summary
  • ID
    rs239643732
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr3:82938943 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AAAGAGTATC ACACAGGTAA
AGCGGTCACT TCTAAAGGAG ATAAAGAGCT CCTGATTGGA AAGGAGAAAG TCACCTCTTC
TGGCACAAGC ACCACACATC GTTCATGCTC TAAAACCATT ACCAAGACTG TCACAGGTCC
TGATGGTCGC CGAGAAGTGG TCAAAGAAGT GATCACCTCG GATGATGGCT CAGACTGTGG
Y
GATGCCACCG AGTTAGACAT ATCCCACAGT TTTAGCGGCA GTCTCGACGA ACTCTCTGAA
AGGCATCCTG ACCTTTCTGG GTTTTTTGAC AACCACTTTG GTTTAATCTC ACCTAACTTC
AAAGAATTTG GCAGTAAGAC CCATTCTGAT TCCGACATCC TCACAAACAT TGAGGACCCC
AGCTCCCATG TACCTGAGTT                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss358676707 MGP_WTSI_3_82835558 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs239643732 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss358676707 MGP_WTSI_3_82835558 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:82938943 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Fga fibrinogen alpha chain Coding-Synonymous
Rr375250 regulatory region 375250 within coordinates
Tssr917 transcription start site region 917 62 bp upstream
Tssr29668 transcription start site region 29668 1427 bp downstream
Tssr29669 transcription start site region 29669 1377 bp downstream
Tssr29670 transcription start site region 29670 1340 bp downstream
Tssr29671 transcription start site region 29671 791 bp downstream
Tssr29672 transcription start site region 29672 698 bp downstream
Tssr29673 transcription start site region 29673 651 bp downstream
Tssr29674 transcription start site region 29674 617 bp downstream
Tssr29675 transcription start site region 29675 611 bp downstream
Tssr29676 transcription start site region 29676 597 bp downstream
Tssr29677 transcription start site region 29677 582 bp downstream
Tssr29678 transcription start site region 29678 507 bp downstream
Tssr29679 transcription start site region 29679 448 bp downstream
Tssr29680 transcription start site region 29680 424 bp downstream
Tssr29681 transcription start site region 29681 322 bp downstream
Tssr29682 transcription start site region 29682 291 bp downstream
Tssr29683 transcription start site region 29683 260 bp downstream
Tssr29684 transcription start site region 29684 221 bp downstream
Tssr29685 transcription start site region 29685 175 bp downstream
Tssr29686 transcription start site region 29686 86 bp downstream
Tssr29687 transcription start site region 29687 33 bp downstream
Tssr29688 transcription start site region 29688 8 bp downstream
Tssr29689 transcription start site region 29689 5 bp upstream
Tssr29690 transcription start site region 29690 35 bp upstream
Tssr29691 transcription start site region 29691 81 bp upstream
Tssr29692 transcription start site region 29692 97 bp upstream
Tssr29693 transcription start site region 29693 128 bp upstream
Tssr29694 transcription start site region 29694 161 bp upstream
Tssr29695 transcription start site region 29695 187 bp upstream
Tssr29696 transcription start site region 29696 200 bp upstream
Tssr29697 transcription start site region 29697 224 bp upstream
Tssr29698 transcription start site region 29698 361 bp upstream
Tssr29699 transcription start site region 29699 443 bp upstream
Tssr29700 transcription start site region 29700 456 bp upstream
Tssr29701 transcription start site region 29701 488 bp upstream
Tssr33800 transcription start site region 33800 513 bp upstream
Tssr33801 transcription start site region 33801 150 bp upstream
Tssr33802 transcription start site region 33802 26 bp upstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
03/18/2025
MGI 6.24 		The Jackson Laboratory