rs239639847 SNP Detail

Summary

• ID
  rs239639847
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:133251062 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGAGCGGT GTCACCGAGC
  CCCTGCTTGT CACTCGAAAG AATTAAGCCA GCAGTTTCTA ATGTTCAAGG CGCCCCCGTA
  AGTTCCTCTA TTTTGCACAA ATTTCCACTC CGTACGGTAA AGTAATGAAG AAACCGCCTT
  GTGGGAAGCT GAATTCCGAA CAAGCAGAGA GCGCTCAGTT TTCCCTGAAG TTCAAGGCTT
  K
  TGCGCACCAG CTCTTCTGCT GGCACTTCCG TTTTTTAAAC TTACATTTTA AATGTTCCTT
  TTGGTAATTA TTAACTTTTG AAGATGAGAT CGAGGCAAAT TCATAGGAAT CATGAGACAG
  TAGTTTAGGA AATTTGTGCT CACACATCCA CCCACCCTCC TCCTGTCTTC AAGTTTTCAG
  TCACTGAATG TTACGTTTTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359791704	MGP_WTSI_3_133208265	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G	G	G	G	T	G	G	G	G	T	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239639847					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G	G	G	G	T	G	G	G	G	T	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359791704	MGP_WTSI_3_133208265	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:133251062 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13849	CpG island 13849	176 bp distal
Gm42567	predicted gene 42567	within coordinates
Rr585564	regulatory region 585564	1692 bp distal
Rr585565	regulatory region 585565	944 bp distal
Rr585566	regulatory region 585566	1666 bp distal
Rr585567	regulatory region 585567	216 bp distal
Rr585568	regulatory region 585568	within coordinates
Tet2	tet methylcytosine dioxygenase 2	180 bp upstream
Tssr35764	transcription start site region 35764	1037 bp upstream
Tssr35765	transcription start site region 35765	988 bp upstream
Tssr35766	transcription start site region 35766	889 bp upstream
Tssr35767	transcription start site region 35767	635 bp upstream
Tssr35768	transcription start site region 35768	146 bp upstream
Tssr35769	transcription start site region 35769	16 bp downstream