rs239624520 SNP Detail

Summary

• ID
  rs239624520
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:21987287 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTGTGGTC GGCCTCTCTC
  TCCTTTCTGC AAAACTAAAA TTAACTTCCA TGTGGTCCGA ATGGGAGCCA GAGTGAAAAC
  AGTGCGGAGT GACCCGGTGA CTGGGAGAGG TATTACATAA GCTGCCAAAC TTCCTAAACC
  TACTTAAAGA GTTCTGCCCT TTATCCTTTA GAGGCTACCT TCATTGCAGT GAGGGAAAAT
  M
  GCTTTTAAGA TGTTAGAAGT CTACGAGAGC TGAGGATTTA CACATCAGAA ACAAAAGTCA
  GTTTTAAAAT CTGAAAGAAA GAAAGAAAGA AAGAAAGAAA GAAAGAAAGA AAGAAAAAAG
  TCCGTATCTC TTTCTTAAAT CCAAGAGAAT GAATGATAAG ACTCCCAAAT TCAAGGATTC
  CTCCAGAGTT CCATGTCAAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367640505	MGP_WTSI_6_21937288	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239624520					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367640505	MGP_WTSI_6_21937288	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:21987287 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cped1	cadherin-like and PC-esterase domain containing 1			Intron
				Noncoding-Transcript-Variant
Cpgi17190	CpG island 17190			1219 bp distal
Rr627035	regulatory region 627035			1362 bp distal
Rr627036	regulatory region 627036			682 bp distal
Tssr1788	transcription start site region 1788			1024 bp downstream
Tssr55139	transcription start site region 55139			1316 bp downstream
Tssr55140	transcription start site region 55140			1296 bp downstream
Tssr55141	transcription start site region 55141			1138 bp downstream
Tssr55142	transcription start site region 55142			1113 bp downstream
Tssr55143	transcription start site region 55143			1078 bp downstream
Tssr55144	transcription start site region 55144			926 bp downstream
Tssr55145	transcription start site region 55145			853 bp downstream
Tssr55146	transcription start site region 55146			831 bp downstream
Tssr55147	transcription start site region 55147			371 bp downstream
Tssr55148	transcription start site region 55148			292 bp downstream