rs239606460 SNP Detail

Summary

• ID
  rs239606460
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:112472069 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGGTGCTGA ACACTTGGCC ACAATCTTCC
  TGCTGCTGAC AGCCTCGCCC TTGGCCTCCT TCATTTGCTA CTGCCAGCAA GAGACCAGGG
  ACAGCAGGAC ATGTGGACTG GCCTGGCCTG GGACATTCAG GGGTTGGTTG TGTTCCGGTG
  Y
  CAGCTTGGAG CTATAACTTG AATTATTCTC CCAGCCGGAA TCATTTTGGA CTCTTCACCC
  TGTGTTTTCG TTCCAGTGTT CCTTGGAGGG Taaaaaaaaa aaaaaaagaa agaaagaaaa
  GCATGCTTTT GTATTAGAGA AAACTGTGAA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321908087	CHEV_6_112445102	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239606460					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:112472069 () rs orientation: forward

Symbol	Name	Function Class
Rr636354	regulatory region 636354	within coordinates
Rr636355	regulatory region 636355	164 bp distal
Rr636356	regulatory region 636356	1265 bp proximal