rs239604314 SNP Detail

Summary

• ID
  rs239604314
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113698661 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACCTTCATC CTGTCAATAG
  GAGCTGAGAG AGATTACATG GCTCTAGAAA GGACAACACC CCATTCTTAA TAAAGCCAAG
  ACCAAAACAG GTGGATGAAA TTTCAATGTA TGTATTATTA GGGTTCTCTA GAGAAACAAA
  ACCGACATAA TGAACATACG TATATTAAGG GGAATTTAGT AGAGTGATTT ATAGGCCAAC
  A
  ATGGGTGTCT CCTGACAAAA GGGCCAAGAA TCCATTAGTT GCTCAGTCAT GATGTGGGAT
  GTCAGATGGT CTTTTGTCAA CATTTGAATC CAGAAGCAGG TTTAACACCA GTGAGCCATG
  CTTTAGCCAA GGGATAGATG AACTGGACAG TGAGAGAGAG GGCAAGCAGG CAAAAAACGA
  AAGCTTCCTT CTGTGTCCTT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321911662	CHEV_6_113671694	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239604314					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113698661 () rs orientation: forward

Symbol	Name	Function Class
Ghrl	ghrelin	1820 bp upstream
Rr636588	regulatory region 636588	255 bp distal
Tssr62471	transcription start site region 62471	1817 bp upstream