rs239583612 SNP Detail

Summary

• ID
  rs239583612
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:52894308 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGAAGAGA GAGTGTAACA
  TACAACTTTC ATTTTATGTG TGCATGTTTC TGTGTGAACA CGTTTGTGGA GGCCTGTGTA
  TATGTGTGTG TATGTGTGTG TGTATGTGTG TGTATATGTG TGCGTGTGTG TGTACAGAGG
  ACAGAGGACA ACTTTGGGTG CTATTCTCCA GGTACCATTC ACCTCCCCCC CCCCCCCCAC
  R
  CGCCAAGACA GAGTCTCTAG TAGCCTAGAC CTTGGCAAGT GGACGAGGCT GGCCAGTGAA
  CCCCACGGCT CCCTGAGGTT TCCCTCCTCT TGCCAGCACT TGGGATTACA GGTGTGCGCC
  ACCACATCTG GCGTTTTAAG TGGGTGCTAG GGACTGAGTT CAGGCTCTCA GACTTGGGTG
  GCAAGCACGT TACTGACTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320766361	CHEV_3_52790809	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239583612					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52894308 () rs orientation: forward

Symbol	Name	Function Class
Cog6	component of oligomeric golgi complex 6	Intron
Gm65168	predicted gene, 65168	within coordinates
Rr397670	regulatory region 397670	1053 bp downstream
Rr576616	regulatory region 576616	958 bp distal