rs239565471 SNP Detail

Summary

• ID
  rs239565471
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:114156201 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACAATGTG CTTCACACAT
  TTCCTCTTTC AGCACATGGT TTTCCCCAAG CACCTCAGAA CAATGTCTGC CATCAGAATG
  ATGCTAATAG GAACAGCTCA CTCACAAACA AAACAAAACA AAAACTAAAA CTAAAAACAA
  AACAAAACAA ACAAACAAAA TAACCCTCTG CTATCTCAAG CACAGCTGCC CACCTTGTAG
  C
  TTGTCTTTTC TTTGCCTTTT CCTGTCTATG TTAAACTTCA CACAAGGACA CAGGGAAGAG
  CAAAGGAGAT GCAGGTGCTT GTGGAAGTGA CAGAGTCCAG AGGCCCGGAA ACCTGCCCTG
  AGGATGTCTC TCTCCAGTGA TCCCACGTCT ACTCCATACA TCATTAATCC TGAGTTAATA
  CAATGGCAGC CTTAGCAAAA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	I/LnJ	KK/HlJ	LEWES/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ
ss362912029	MGP_WTSI_4_113971609	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	I/LnJ	KK/HlJ	LEWES/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ
rs239565471					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362912029	MGP_WTSI_4_113971609	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:114156201 () rs orientation: forward

Symbol	Name	Function Class
Rr597539	regulatory region 597539	1458 bp proximal
Rr597540	regulatory region 597540	1532 bp proximal