rs239538317 SNP Detail

Summary

• ID
  rs239538317
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:113358649 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ttacaactg aaccgtatct ccaactccAA
  TGTAATTTAT ATGACTCAAA CTATTGTAGC GTTAGGATGG ACTGCTGCCA TTTGAGAGAC
  ATGGTATGCT GCGTGCTATT ACTTGATATA CATGGTTTTC ACTGGACAtt ttatttattt
  K
  taaagattta ttattatatg taagtacact gtagctatct tcagatgcac cagaagaggg
  cggcagatct cattacagat ggttgtgagt caccatgtgg ttgctgggat ttgaactcag
  gacctttgac agagcagtcc gtgctctaac                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321910709	CHEV_6_113331682	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239538317					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113358649 () rs orientation: forward

Symbol	Name	Function Class
Arpc4	actin related protein 2/3 complex, subunit 4	Intron
Rr636502	regulatory region 636502	46 bp proximal
Tssr58200	transcription start site region 58200	941 bp downstream