rs239536241 SNP Detail

Summary

• ID
  rs239536241
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:79106423 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGCTGCAT CTAATCAGTC
  CAGATCTCCT TAGGATTTTG ATAGGCGTCC CTGAGGCTGT CACCAGTCCC CTCCCTTCCC
  CAGATGGCCC CCTGTGCACA CAGTACCCAG TATGCATATT CCGAGTCCAC ACAGATCTTT
  ATGCTTTTTC CTCTGCTGGG CTTCAGAGCT CTTGTCTGAG CTGAGTTCAG GGGGTTTCAG
  C
  GTCAGCCAGA AGGGATTTCA GTCTCAAACT GTCTTCACAG CATATCCCAA TCTTCTGATT
  CCATCCTGAA CAAATGAATT CCCAGCCCTA AACAACTGGA CATTGGAACT CTGCAGAGAG
  TGATCCTTAG GAGCTGGCCT GCATAGACGC TGCATAGCCT GCATAGTTGG CAGCAGAAGT
  GCTCAAGGCC TGCCTCTTCA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323759338	CHEV_11_79029099	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239536241					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:79106423 () rs orientation: forward

Symbol	Name	Function Class
Gm74268	predicted gene, 74268	within coordinates
Rr402771	regulatory region 402771	1229 bp downstream
Rr452198	regulatory region 452198	895 bp distal
Rr452199	regulatory region 452199	1454 bp distal
Rr452200	regulatory region 452200	1630 bp proximal