rs239491771 SNP Detail

Summary

• ID
  rs239491771
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:95289860 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGACTCGGC TCCCAGGATT
  CGCTCTGGAG AAGAGTTGGT GATAAAAGTT TGAGCAGAAA TACCCCGGAC GTACGCTCCT
  TTCATCCCCA GCGGTCAGCA CTGGTGTCCC CTCCTAGGAC GCGAGCAGCA CCGCCCAACA
  GCGCTGTGTG CAGCGGGAAC CCAGTTCTGA AGCCTTGGCC CTGGTGCTAG CCCATTCCAG
  Y
  GGGTTTGTGG TTTCTCCCTC AAGGAGGAAG TAATAAATCT TTCTGGGCCC GGGGTCACTG
  AAGAGGCTTC AGAGTATGCC TCTCCGCAAC CTTTCCGAGT GTCCTGGATT TGGACAAGGC
  CACAAGGTTT CGATGATCCC ACCCCCACCT CCTGCCCGGC AGATGTTCTA GGCTTGTGGA
  GTTTCCACCT CTGCTGACAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378551953	MGP_WTSI_9_95308226	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239491771					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378551953	MGP_WTSI_9_95308226	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:95289860 () rs orientation: forward

Symbol	Name	Function Class
Chst2	carbohydrate sulfotransferase 2	537 bp upstream
Gm35915	predicted gene, 35915	within coordinates
Gm37805	predicted gene, 37805	within coordinates
Rr684787	regulatory region 684787	1845 bp distal
Rr684788	regulatory region 684788	1822 bp distal
Rr684789	regulatory region 684789	1663 bp distal
Rr684790	regulatory region 684790	442 bp distal
Rr684791	regulatory region 684791	within coordinates
Tssr86547	transcription start site region 86547	368 bp downstream
Tssr90904	transcription start site region 90904	688 bp upstream
Tssr90905	transcription start site region 90905	616 bp upstream
Tssr90906	transcription start site region 90906	595 bp upstream
Tssr90907	transcription start site region 90907	568 bp upstream
Tssr90908	transcription start site region 90908	531 bp upstream
Tssr90909	transcription start site region 90909	508 bp upstream
Tssr90910	transcription start site region 90910	474 bp upstream
Tssr90911	transcription start site region 90911	446 bp upstream
Tssr90912	transcription start site region 90912	28 bp upstream