rs239480014 SNP Detail

Summary

• ID
  rs239480014
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52814566 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTAGTTGAT GTTTGTCAAT
  GATGCACACT GCCTGGATTG AAGTCTTCTC AGCCCCAGTG CTCTGAGCCA GCTCTGCCTG
  AGGATCTTGG CACATTTGAA TCCCAGTTGT CACCACTTAG CTGTTATATT TAAAATTCCA
  CTTCCAGGCT GGGCTAGTCT CTAAGTCCTT GGTTCTCTTC TTCCACTACG TGAGTTCTCT
  R
  AATTTAATTT GGGTCTCACC CACTGAGACT TATCATTGGC TTTTATCTCT GGGTTTTTTG
  GGTTTCAATC TTCCTTCAGT TCTTAGTCGC TTTCTATATA TGGGCTATTT ATTATTCTAG
  CCATTCTGGA CTCCCTCCTC CTCCAAGTAT ACAAACACTC ACCCCTTCAA GAACTCTTTC
  AGAGCTTTCC CCATGAACCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320765871	CHEV_3_52711067	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239480014					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52814566 () rs orientation: forward

Symbol	Name	Function Class
Gm20750	predicted gene, 20750	within coordinates
Rr576600	regulatory region 576600	120 bp proximal
Rr576601	regulatory region 576601	209 bp proximal