rs239471816 SNP Detail

Summary

• ID
  rs239471816
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:75465335 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAGGTAAC TCTGCCTGGG
  ATATTAAGGG CGTGGTTAAG GATTTTGTTT TGAGTTGCAC CATTAAAACT GGTCTGGGAG
  ATCACAAGAT TGAAGAAAGC CCTGCTAATT GAGTACCAGG TGGATGGTGT CAAGCTAGAT
  GCGTAGCTGT TAAAAAGGCA AAATTGGCAT TGATAGAGAA CCACTTTGTA ACTGTTTCAC
  W
  AAGAAAATAA CTTTGTCCTC TTCAGTGCCT GACGCTTGTG TTAGTTTATC AGATTGTCCT
  GCCACGGACA GTCTATCCAA GATAACCGGT TGTATTGCAG GGTCTTTGGA TTGCAAAAGA
  TATGGGTTAA AGAAGCAAAT AATAAGATAG GATGGGTTCC GGCTAAACCT ATCCTAAGTA
  TAACTTTTAC CAGCATTAAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358480681	MGP_WTSI_3_75361950	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239471816					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358480681	MGP_WTSI_3_75361950	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:75465335 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13269	CpG island 13269			270 bp distal
Pdcd10	programmed cell death 10			1176 bp upstream
Rr578348	regulatory region 578348			1228 bp distal
Rr578349	regulatory region 578349			471 bp distal
Rr578350	regulatory region 578350			1170 bp distal
Rr578351	regulatory region 578351			within coordinates
Serpini1	serine (or cysteine) peptidase inhibitor, clade I, member 1			Intron
				Noncoding-Transcript-Variant
Tssr29563	transcription start site region 29563			507 bp downstream
Tssr29564	transcription start site region 29564			467 bp downstream
Tssr29565	transcription start site region 29565			441 bp downstream
Tssr29566	transcription start site region 29566			423 bp downstream
Tssr33586	transcription start site region 33586			1157 bp upstream
Tssr33587	transcription start site region 33587			1109 bp upstream
Tssr33588	transcription start site region 33588			1089 bp upstream