rs239470105 SNP Detail

Summary

• ID
  rs239470105
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:137572788 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTTT TGGCGTCCCC CCCCCCCCCA
  R
  TTGACAGTTA ACTAATGTGA AAGGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss916465598	MGP_WTSI_3_137867027	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A	G	A	A	G	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239470105					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A	G	A	A	G	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss916465598	MGP_WTSI_3_137867027	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137572788 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13866	CpG island 13866	1199 bp distal
Cpgi13867	CpG island 13867	324 bp proximal
Dnajb14	DnaJ heat shock protein family (Hsp40) member B14	13 bp upstream
H2az1	H2A.Z variant histone 1	105 bp downstream
Rr398061	regulatory region 398061	1022 bp downstream
Rr586003	regulatory region 586003	1792 bp distal
Rr586004	regulatory region 586004	1255 bp distal
Rr586005	regulatory region 586005	657 bp distal
Rr586006	regulatory region 586006	158 bp proximal
Rr586007	regulatory region 586007	728 bp proximal
Tssr31915	transcription start site region 31915	1906 bp downstream
Tssr31916	transcription start site region 31916	1156 bp downstream
Tssr31917	transcription start site region 31917	1089 bp downstream
Tssr31918	transcription start site region 31918	731 bp upstream
Tssr31919	transcription start site region 31919	780 bp upstream
Tssr31920	transcription start site region 31920	832 bp upstream
Tssr31921	transcription start site region 31921	851 bp upstream
Tssr31922	transcription start site region 31922	931 bp upstream
Tssr31923	transcription start site region 31923	1035 bp upstream
Tssr31924	transcription start site region 31924	1050 bp upstream
Tssr31925	transcription start site region 31925	1094 bp upstream