rs239454525 SNP Detail

Summary

• ID
  rs239454525
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:110253393 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCAGTGTT CAGATTTGCA
  AATATGGACC TCCGAGCCAG CTTTACTTCT TTTACTTACT CTGTTAACTG TAATCGAGGC
  ATCTTGATAT GTAGCTGTCC TCCCCTTTTA CCTCCTCCAA CTCCCTCCTC CCCTACCCCC
  CCCCCAGCAT CCTCAACACG TCCCCTCCCC CACCTCATGT CTTCTCTGAG TCCTGTTAGC
  R
  CCACCGGTTG CAAAGCTGAC TGATCTTGTG GACTTGTCCA GGGAACCACA TCTGCAAGTG
  AGTCCACAGA TGCAGAGGCC ATACTATGTT CAGAAGACAG TTTCAGAGCG CTCTATCCTG
  TCCATCCCTC TTCTGTGATG CCCCTGAGAC TTGGGTGGGG CATGTGTGAT ACAGATGACC
  CACTTAGGAC TGAGCACGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378902824	MGP_WTSI_9_110326829	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239454525					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378902824	MGP_WTSI_9_110326829	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110253393 () rs orientation: forward

Symbol	Name	Function Class
Klhl18	kelch-like 18	1601 bp downstream
Ngp	neutrophilic granule protein	1313 bp downstream
Tssr3023	transcription start site region 3023	1943 bp upstream
Tssr3024	transcription start site region 3024	1925 bp upstream
Tssr3025	transcription start site region 3025	1836 bp upstream
Tssr3026	transcription start site region 3026	1787 bp upstream
Tssr3027	transcription start site region 3027	1690 bp upstream
Tssr3028	transcription start site region 3028	1624 bp upstream
Tssr3029	transcription start site region 3029	1608 bp upstream
Tssr3030	transcription start site region 3030	1597 bp upstream
Tssr3031	transcription start site region 3031	1405 bp upstream
Tssr87370	transcription start site region 87370	1979 bp downstream
Tssr87371	transcription start site region 87371	1951 bp downstream
Tssr87372	transcription start site region 87372	1881 bp downstream
Tssr87373	transcription start site region 87373	1841 bp downstream
Tssr87374	transcription start site region 87374	1819 bp downstream
Tssr87375	transcription start site region 87375	1796 bp downstream
Tssr87376	transcription start site region 87376	1790 bp downstream
Tssr87377	transcription start site region 87377	1776 bp downstream
Tssr87378	transcription start site region 87378	1725 bp downstream
Tssr87379	transcription start site region 87379	1680 bp downstream
Tssr87380	transcription start site region 87380	1463 bp downstream
Tssr91619	transcription start site region 91619	1995 bp upstream
Tssr91620	transcription start site region 91620	1891 bp upstream
Tssr91621	transcription start site region 91621	1812 bp upstream
Tssr91622	transcription start site region 91622	1750 bp upstream
Tssr91623	transcription start site region 91623	1315 bp upstream