rs239454298 SNP Detail

Summary

• ID
  rs239454298
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:55447114 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGTA AAATTAACTG TCACCTTCCC
  R
  GCCACCCATG GGCTGTTGAA GCCCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320775352	CHEV_3_55343615	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239454298					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:55447114 () rs orientation: forward

Symbol	Name	Function Class
Dclk1	doublecortin-like kinase 1	625 bp downstream
Gm31796	predicted gene, 31796	757 bp downstream
Rr576964	regulatory region 576964	1507 bp distal
Rr576965	regulatory region 576965	within coordinates
Rr576966	regulatory region 576966	787 bp proximal
Tssr33298	transcription start site region 33298	276 bp downstream