rs239400099 SNP Detail

Summary

• ID
  rs239400099
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:113356937 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AAACTGGTG AAGGAAAAAT TTATTCCTAA
  CGTTCTGTTG TGAATTTTAT GTAAAGTGAA CATACCATAA ACTGTAAGAA ATGCATTGAG
  GGGGAAGTCA AAAAGGCCAC TTTGAGGAAG GAAGGGGCCT TCTCCACTGA GCTGAGCTCT
  R
  AGAGGCTGAG CTAAGCTGCG GGGAGGAAGG GCTGCAGGTG ATGGATGCTC CAGCATGTGA
  TAAGCCCTGG GGGGAGAGAA GCCTTGCCCG AGATAATGTA GCTGGTCATT GTAGCTGACC
  TTGTCCACTG AGAATGGACA GCTTTTACTT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321910703	CHEV_6_113329970	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239400099					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113356937 () rs orientation: forward

Symbol	Name	Function Class
Arpc4	actin related protein 2/3 complex, subunit 4	Intron
Cpgi17841	CpG island 17841	1152 bp distal
Rr368143	regulatory region 368143	1871 bp downstream
Rr636499	regulatory region 636499	1396 bp distal
Rr636500	regulatory region 636500	1070 bp distal
Rr636501	regulatory region 636501	388 bp distal
Rr636502	regulatory region 636502	1758 bp proximal
Tssr58199	transcription start site region 58199	1785 bp downstream
Tssr58200	transcription start site region 58200	737 bp upstream