rs239391118 SNP Detail

Summary

• ID
  rs239391118
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152635841 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGGTTGGAC TGAAGAAGAG
  GGCAAAGCAG GAGAGAGTTA GGTCCTCTTT GGAACAGACT GCAGAGGGGT AAGGTGTAGC
  TGTTAGAGTT TCCCAGGCCA TTGCCCACCA GCCAGCCAAG AGTTAGAGGC ACAAGTGCGG
  GAGCATGATG GTTCTTCATT TTTTAATATT TCCCACAGCA CCGCCCTCCC TCTTTTCCTC
  C
  CCCTCTTCCT CCCCTCCCTC TCTCCCTCTT TTCCTCCCCC TCTTCCTCCT CTGTCCTTCC
  TTTTCGCCTA GTACCAGAGG GAATGATGGA TCAGCCAAGC TAACCTTAGC AACTGTCAGG
  GCCGTAGCTC CTCTGTAGGT TGTTAAGTTA CTTCTTTAGG TTTAGATTCA GTTTTCCAAA
  GCCACGAACC ACAGATACGA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321029251	CHEV_3_152593168	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239391118					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152635841 () rs orientation: forward

Symbol	Name	Function Class
Gm16213	predicted gene 16213	within coordinates
Gm46830	predicted gene, 46830	within coordinates
Gm66995	predicted gene, 66995	within coordinates
Rr587627	regulatory region 587627	1300 bp distal
Rr587628	regulatory region 587628	99 bp distal
Rr587629	regulatory region 587629	77 bp proximal
Rr587630	regulatory region 587630	1925 bp proximal
St6galnac5	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	Intron
Tssr32427	transcription start site region 32427	1304 bp downstream
Tssr32428	transcription start site region 32428	156 bp downstream