rs239390844 SNP Detail

Summary

• ID
  rs239390844
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:109247186 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTAATGAAA CAGCAGCAGC
  AGCAGCAGCA GCAGCAGCAG CAGCAGCAAC AACAGATATA AAATCCCACC AAACTAGATT
  TCAATTAAAA AAAAAAAAAG ACTAGCGAAG AGGGCATTTA CAGGGAGTTG TCAGAGTTCA
  GTGAAATAAT ATATTACTAC AAAAAGCTTA TACACCCTTT TCGGCTTTGT AGGGCAGTGG
  A
  AATAAAAAAG ACAGGGAGAA CCTTGCCTCA GTATGACAGA GTTGACATGT GTGGGTGTGT
  GTGGGGGGGA ACTTTCCAAT TTTCCCCAGG GTTCTCCAAA TATGCTGACC CAGTCTCTCA
  GTGTCTCGGT ACTGAAGCGA TTTGAGCTCA AACCTGGTGG CAAGTCACTG ACGCATGCGC
  GCTCTTGCCT CTGTGTCACC                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320868530	CHEV_3_109142788	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239390844					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:109247186 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13716	CpG island 13716	258 bp proximal
Rr367533	regulatory region 367533	1905 bp upstream
Rr583407	regulatory region 583407	293 bp proximal
Tssr31282	transcription start site region 31282	469 bp upstream
Tssr31283	transcription start site region 31283	594 bp upstream
Tssr31284	transcription start site region 31284	757 bp upstream
Tssr31285	transcription start site region 31285	792 bp upstream
Tssr31286	transcription start site region 31286	801 bp upstream
Tssr31287	transcription start site region 31287	833 bp upstream
Tssr31288	transcription start site region 31288	861 bp upstream
Tssr31289	transcription start site region 31289	884 bp upstream
Tssr31290	transcription start site region 31290	923 bp upstream
Vav3	vav 3 oncogene	783 bp upstream