rs239379070 SNP Detail

Summary

• ID
  rs239379070
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:102280138 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGCCAAAAT GATAGGAGTT CAGGAATGGG
  TGAGACAAAC TGTCAGGGTC TGGAGGGCTC CCAGGGGCGG GGAAGTCTTG CTCTCTTTGT
  CCTATCCAGA GCTGTCCCTC AGCTTGGAAC AGTTATCTCA CCATCGCGCG CCGGAACAAA
  R
  GGCGAACACA GGAAGGGGGT TTCACCAGCC CTTGTCACAG CCTGCTCTGG GGCCACCAGC
  GCTGTGTTTA GTAGGAAATA GAGGAATTAG CTCAAACGGA AGTTTTCCTT TTTGGGAAGG
  GGTGGAGGGG GCGACAAAAA TGGACTGCAT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320437737	CHEV_2_102289950	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239379070					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102280138 () rs orientation: forward

Symbol	Name	Function Class
Fjx1	four jointed box 1	mRNA-UTR
Rr561693	regulatory region 561693	1641 bp distal
Rr561694	regulatory region 561694	946 bp proximal
Rr561695	regulatory region 561695	1530 bp proximal
Tssr25397	transcription start site region 25397	1967 bp downstream