rs239377012 SNP Detail

Summary

• ID
  rs239377012
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:37435280 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGAATGCCA GTAATACAtg tgtgtgtgtg
  tgtgtgtgtg catgtgagtc catgtgtata tatgtgtgtt tatgtgtgtg tatgtgtata
  tgcttgtatg tgcgtattat ttgccctcat atgcatatgt gaatgtgtac ttacatatat
  G
  tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgAATGTA TGTATGTATT
  TGGACAGACA CAGTGTAACA GCATCTCTGT CACTGTGTCA CATGCAGTCA TTTCACTGGG
  AATCCTGAGC TGTACACATT CACCCCAGCC                                 
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320709713	CHEV_3_37280053	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239377012					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37435280 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fgf2	fibroblast growth factor 2			Intron
				Noncoding-Transcript-Variant
Gm43439	predicted gene 43439			within coordinates
Rr575471	regulatory region 575471			1716 bp distal
Rr575472	regulatory region 575472			366 bp distal
Rr575473	regulatory region 575473			1902 bp proximal