rs239356926 SNP Detail

Summary

• ID
  rs239356926
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:115674575 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ttccttatc tcatgcagcc tagccctcct
  tctcttccag gtttccaaca tgcctttcca gcctaggacc caaaacatgt ggtcggctgg
  ccggacacaa caGGTACACA CATATAAGTA AAAACAAAAT AAATATTTTA AAAGTAATAC
  Y
  GTGGTTTAAA TTTTCCTTAG GTTCAGTAAA TGAAACCATC ATTTCCTGTC TTTTGGTTTT
  GTTTCTGGTT TTGGTTTTGT CCTGGGCCTG AGTTTGTCCT TCATCTCAAG CCTTATCTTT
  ATGTCTCTTG TTCCAAGGCA AAAGAAAAAT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321916394	CHEV_6_115647632	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239356926					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115674575 () rs orientation: forward

Symbol	Name	Function Class
Rr379973	regulatory region 379973	158 bp upstream
Rr637025	regulatory region 637025	1890 bp distal
Rr637026	regulatory region 637026	692 bp distal
Rr637027	regulatory region 637027	within coordinates
Rr637028	regulatory region 637028	1173 bp proximal
Rr637029	regulatory region 637029	1269 bp proximal
Rr637030	regulatory region 637030	1503 bp proximal