rs239337117 SNP Detail

Summary

• ID
  rs239337117
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101050413 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACAGGGAA GATGGACTGT
  TTTCACCAAG GTCCCGTCTG ATCCAGACAT ATACGGGATC TTATGGTTTC CCATAGAACT
  GAGCCCAGTT GGGACTAGGA CCCTGTTCAT GGCCCTACAG TTTGAAGGGC CCCAATCCAA
  GCTAGGACAG TACTGTAGAA AGAGAAGTCC CCACTGACCA CCTGAAGCAC CACCCTCCCC
  Y
  TCATATTGTC CACTCCCTTT CCATCCCTGG CATAGTCCCT TGCTGAAGCA GCCACTGGCA
  AGTGGACAGC ACCAGTCCCT CTGATTACAG AGAACATTTG GATCATATAC CTTCATCCTG
  CATAAGGAGC CCTGGCCTTG TGAGCTCAGG CCACCTATTG CCACATTCAG TGTGGCCTCT
  GCAGGGTAGA TGCTCCACCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320851089	CHEV_3_100947020	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239337117					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101050413 () rs orientation: forward

Symbol	Name	Function Class
Rr581968	regulatory region 581968	1031 bp distal
Rr581969	regulatory region 581969	1793 bp proximal