rs239299192 SNP Detail

Summary

• ID
  rs239299192
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:115154414 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTGACCCT TACTGAGAGG
  GGGTGTCTGC AAAAGCAGAT TTTTAGGGGG AGACAAGGAG TGGGTTAGGC TTAGAAGTTT
  GAAGTTCAGG TAAACATATT GTATTCCACG ACTGGTCCAT ACCAGAACAG AAAGAACCAC
  TTCATTCTTT TTTGTCACGA TCTTTCGCTG AATATACTGA GGCACAAATA CATGCCACAG
  Y
  AAACTTAAGG AAAAGGTAAT TTTCATGGAA AACGACATTA TGACACTGTG AACTTCTGTT
  AGCAGGAAGA CGAGTAAGGC CCAGCTCACA GGTGGTTTGA TCTTGGGTAA GAGGAGGGCA
  CCTGATTTAT TATTTTAACA GAAGTGGTGG GAAAACTGGG CAAAGCTACC GAAAGTTGTG
  TCGATTAGAT GGTGGGAAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321915412	CHEV_6_115127471	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239299192					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115154414 () rs orientation: forward

Symbol	Name	Function Class
Rr636932	regulatory region 636932	1464 bp proximal
Syn2	synapsin II	Intron