rs239298188 SNP Detail

Summary

• ID
  rs239298188
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:98692303 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTGGTTTAA TAGTGAACGC CCTTAACTCT
  CCTCCGGCTT CCTGTGCCTA TGGCACTAGA ACGAGGCTCA ATAAAATGCT CCACAGGTGG
  GCTTCAAAGG CTTAACATGA AACATTAACA CAAGCCCCTC ATTCTCTCtc ttaatattga
  K
  tacacgttaa atcactgtgg gtatactggg ctaaatatat tcacaattaa ttctacctgt
  tgttatttTG TGTTCCGTTA ACTGCTTCGA ATGAGACCCA AACTGTATTG CTGTTGGCCA
  AAGCTGGTCT TCCAGGCAAC AGTGATATTA                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321221731	CHEV_4_98470757	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239298188					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:98692303 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Kank4	KN motif and ankyrin repeat domains 4			Intron
				Noncoding-Transcript-Variant
Rr595791	regulatory region 595791			within coordinates
Rr595792	regulatory region 595792			1138 bp proximal