rs239292669 SNP Detail

Summary

• ID
  rs239292669
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141233121 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGGACCCG GGTTCAAGAC
  CCATCATGGC AGCTCTCAAG TGTAACTCCA AGATCTGACA CCCTCACACA CAGACATGCA
  TGCAAGCAAA ACACTAATTC ACACAAAGTA AAAATAAATT ATTTTTTAAA AGAGAGAAAA
  AATGGCAAGG AGTTACTAAA TAAAAAGCCC AGAGCCAGGG CTCTCACTCC TATAGGCCGA
  Y
  GCTCAGGAGT GAGGATGCTG TCATAAGTCC TCAGAATTTC TAGAACCTCC AGAAAGTGGA
  AGCCAGCCCG GGCTACTTGA GAAACTTGTA TAAAAACAGA ACAAAGGAGA CAGGGCAGCA
  CCTTTAATCC CAGCACCTGG AGGGAGAGAA AGGTGCGCCT CTGAGTTCGA AGGTCAGCCT
  GGTCTACATA GTAAATTCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321387733	CHEV_4_141061725	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239292669					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141233121 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr603780	regulatory region 603780			1013 bp distal
Rr603781	regulatory region 603781			122 bp proximal
Rr603782	regulatory region 603782			1300 bp proximal
Rr603783	regulatory region 603783			1573 bp proximal
Spen	spen family transcription repressor			Intron
				Noncoding-Transcript-Variant