rs239286519 SNP Detail

Summary

• ID
  rs239286519
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:74031465 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTTGAAAG TCAGAATGGC
  CGTTCAGAAT AGATGGGACA CAATGCTGAG AGAAGAAACT GTGCTGGGGA CTCATCGGGG
  ACTCATGGGT TCTGTTGCTA AATCCTGGGG AAGCTTAGAG TCATAGATAG CAGCGAGGGG
  CCAGAGAAGC AGGTGAGGGA GAAGTGGGGC TCCTGTGGCA CTCCGGAGGG AGGAGTGGGG
  Y
  TCCCGTGGCA CTCAGGAGGG TGAAGTGCGG CTCTGCGAGT GTAGACGCAG GTCGCTGTGA
  AAGCAGCAGG CATGCTGGCA GCAGAATATC AGCCTCAGGC CCGGATTCTA CACTGTGCGT
  GCATAGGCAC CCGGTCACCA CTCTATTCCC AAGACTTACG TAAGCTCCTG TCTGAAATAC
  GTGAAGAAAT GGGCAGGAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320346974	CHEV_2_74039178	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239286519					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74031465 () rs orientation: forward

Symbol	Name	Function Class
Gm31534	predicted gene, 31534	1950 bp upstream
Gm75409	predicted gene, 75409	within coordinates
Rr559290	regulatory region 559290	592 bp proximal