rs239272928 SNP Detail

Summary

• ID
  rs239272928
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:134274261 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTGGGGG GGGGACAGAG
  TTTCACTATG TAGCCCTGGT TGGTCTGGCT TCATACAGAG GTCTACTTGT CTCTATCACC
  TGATTGCTAG GTTTAAAGGC ATGCATCCTC ACATCTGGTG GGTCGTGTCG TCGCCCCCCC
  CCCCCCGCCT CCCCCCCAGC ATCCTCCACT CCCTTTAAGT TGGAAGACTG TTTTGTTGCC
  R
  TTTGGGAGAA AGAAATAGGC AGGCTGGAGA CCTCAGCAGC CTTGGGAATG AAGGGTTGTA
  GATAGGAAAG AAAATGGCTT GGGAGAGGTT GGGGGTGGGG GTGGGGGTGT CGGGGGGGGG
  GGCAGTTAGT CCAAACCTAG TTTGTAGTGC AGGGTGGTAG TGAGGTGCAT ACCAGTAAAG
  TCGGAACTTG GGAGGATCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322457609	CHEV_7_141864215	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239272928					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:134274261 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi19845	CpG island 19845			855 bp distal
Dock1	dedicator of cytokinesis 1			Intron
				Noncoding-Transcript-Variant
Rr656984	regulatory region 656984			1835 bp distal
Rr656985	regulatory region 656985			386 bp distal
Rr656986	regulatory region 656986			1447 bp proximal
Tssr69616	transcription start site region 69616			1871 bp downstream
Tssr69617	transcription start site region 69617			1817 bp downstream