rs239224716 SNP Detail

Summary

• ID
  rs239224716
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:77647768 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGGAGGGG CTCGCCTGCT
  CCTACTGCCA GACCTCGCTG ATTGAAGTTT CAAAAACTAA ACCGTGTCAG GGGTTCCCCC
  GGTGTAAGCC ATCTTCTGAA AATAGTGTAG ACACAGCCAG GGCGCTTATT TCTGCGACGG
  AGAGCACTTC AAAGAAAACA CTGGGGGGAA GGAAACATAA TTTGAAGGGC TCAGTCTTCT
  R
  AGATGACTTC TTCGGGAAGA AATTCAAGAG TAACAAATGA CAAGGGAACT GTGGAAGGCA
  GCAAAGACTG AAAAAAAAAA ACAGATGACT CGACTTTAAA ATATTTTTCT TTGGATCTTG
  TCTTAGATGA TTGACACAAA GGCCATAAAT AATTAATCCG GCAGCTGTTA ATGTCTTGGC
  ATAGTGTCCG GAGTAAATAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354554530	MGP_WTSI_2_77655481	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239224716					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354554530	MGP_WTSI_2_77655481	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:77647768 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11837	CpG island 11837			96 bp distal
Rr559844	regulatory region 559844			619 bp distal
Rr559845	regulatory region 559845			within coordinates
Rr559846	regulatory region 559846			415 bp distal
Rr559847	regulatory region 559847			346 bp distal
Tssr24865	transcription start site region 24865			796 bp upstream
Tssr24866	transcription start site region 24866			733 bp upstream
Tssr24867	transcription start site region 24867			697 bp upstream
Tssr24868	transcription start site region 24868			676 bp upstream
Tssr24869	transcription start site region 24869			609 bp upstream
Tssr24870	transcription start site region 24870			493 bp upstream
Tssr24871	transcription start site region 24871			1 bp downstream
Tssr24872	transcription start site region 24872			67 bp downstream
Tssr24873	transcription start site region 24873			244 bp downstream
Zfp385b	zinc finger protein 385B			mRNA-UTR
				Noncoding-Transcript-Variant