rs239216047 SNP Detail

Summary

• ID
  rs239216047
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:33075225 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTCGTCTG GAGGTTCTGA
  TACCCTTCCC AGCCCTACAG TGTTTTCTAT TTGGAATCAT TGTCCCTCCC ACCACCCCAC
  CCTAGATAGT GACTCAAGTG AAATCAACCT CCAAATAGTC TCTGGAAGCA AGAAGACATA
  CATCAGGGAC CACAGGCGCA TCATCTCAAT CCATGCGCTG TTTGCCCACT TTCCCCTCCC
  Y
  CCATGCCTGT ATTCTTTCTA AGAAGGCATC CCTTTACTAT TTCTGGTGTA AACTTTCTTC
  ACTGAGAGTA TTTTTTCCCC TCAAGGTTTT TCAGGAAAGC ATGGGGAGTC ATAGTCACCA
  TAGTAAATTG AATTACATTC CAGTGGAACT AGGCTGACTT GTAGGCGAAA GAAAAAAAGG
  TAATAATATA ATAGGGTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321780513	CHEV_6_33048290	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239216047					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:33075225 () rs orientation: forward

Symbol	Name	Function Class
Rr628170	regulatory region 628170	656 bp proximal