rs239199066 SNP Detail

Summary

• ID
  rs239199066
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52706245 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCATGAGTA TATATGCATG AGTACGTATA
  CATTCTTATT CATAAATTAC ATATTGTTTG AAACAATGTA TACATTGAAC ACAGTTCAAT
  GTAGTATTTA AAGGATGAAT TAGGGTTAAA ATAAATACCC CTTTAAATAT GTCACCAGGG
  Y
  TCAAGtctca cagtgcagca gcatatgcat cggttgaggg tcacctttga tggcaatgaa
  cccctgtatc aaagatgttt ctttataatg tcaaagtttc ctgtcaaatt cttctcgggt
  gagattagac ttcttctgag ctcttaggtt                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320765233	CHEV_3_52602746	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239199066					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52706245 () rs orientation: forward

Symbol	Name	Function Class
Gm30292	predicted gene, 30292	1040 bp upstream
Rr576585	regulatory region 576585	687 bp distal
Rr576586	regulatory region 576586	1806 bp proximal