rs239172060 SNP Detail

Summary

• ID
  rs239172060
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141867654 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGCCAACA GGACAAAAGA
  GGGCAGAGGG CTTGCCTGCT AGATACTGTC CCCAACAGCC CTTCCCAGGA GGTGGGCATC
  TTCTCTATTG ACACCGGCCT GGCCTACGTC TGGAATAAAC TAAGGATGGA GAGGCATTGT
  GTGCACCACC GGGGGCCTCT TACCCACTGA CTCAAGCCCA GATGTCTGGT TAGACCTCCA
  T
  GGATGTGCCC CAGGCTATCT CAGGCTATCC TTCCCTGCAC TCAATCCACA TGACTCCAAA
  GACAGGTCCA AGAGAGGGGG GAACGTGACT GTTGGCGCTC TGCTCACTTA AGTCACGATC
  TGCATGTCAG ATAAATAAAT ATATATATAT AAAGAGAGGA TACATGTAGA GAGAAAGGCC
  AGAGCAGAAG GTGGGAGTTC                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321393072	CHEV_4_141696258	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239172060					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141867654 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Kazn	kazrin, periplakin interacting protein			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr377314	regulatory region 377314			1040 bp downstream
Rr604004	regulatory region 604004			1193 bp distal