rs239162686 SNP Detail

Summary

• ID
  rs239162686
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:90570358 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ttgagataa gagggaagtc ggaggggcaa
  aatggagagt gtgcatgata tttcattgta tatgtgtatg aaattctcaa aagtataata
  aaaatgttac tctctgacag gttgaccact ctttatggat ggccccacac ccatatatgt
  R
  tacacacaca cacacacaca cacacataca tatatgtgtg tgtgtgtgtg tatgtataat
  actagtgggt cattataaga aaagggagca tgaagttggg agagggacat ggaagagata
  taggtggagt tgaattgggg agtaggtagt                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320838532	CHEV_3_90466973	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239162686					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90570358 () rs orientation: forward

Symbol	Name	Function Class
Rr580434	regulatory region 580434	1367 bp proximal