rs239116607 SNP Detail

Summary

• ID
  rs239116607
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126390347 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAAAAACTG AAGCGAAACG
  TGGTGCCCTG ACCATCTTTG CCCCTAGCTA AGGGACAGCC GGGCGCAGCA GAGGTGGCCA
  AGGCTGGCAG CCCCAGGCAG TAGCTGCGAG CCGGGGGACG TTGGACCCGG GTCTGGGAGC
  AGTAAACGCG AACCGCGCCC AGATGCAAGG GTTGCTTCCC TCTCTCGGCT TCCCCGGCCT
  Y
  GCGGCCATCC CGCCCGGGTA GAGGCATCCG GGTTGTGGGA GCTTCGAGTG GTCTCTCATC
  TTTCCGCCCT TCGTGGGTCA CTGCGACATC TCAGTCCCGT CCCCTTAAGC GCGCTCCCTG
  CTGCTCCGCG CATCTCCCTT CGGTCTCCCT AGACGGCTGC GGGAGAGCAG CCCGAAGGGA
  CGCGGCTGGA GTCGCTAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320946578	CHEV_3_126299616	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239116607					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126390347 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Cpgi13785	CpG island 13785			within coordinates
Gm17225	predicted gene 17225			within coordinates
Rr367547	regulatory region 367547			234 bp downstream
Rr584646	regulatory region 584646			within coordinates
Rr584647	regulatory region 584647			188 bp proximal
Rr584648	regulatory region 584648			300 bp proximal
Rr584649	regulatory region 584649			727 bp proximal
Tssr31566	transcription start site region 31566			355 bp downstream
Tssr31567	transcription start site region 31567			326 bp downstream
Tssr31568	transcription start site region 31568			279 bp downstream
Tssr31569	transcription start site region 31569			115 bp upstream
Tssr31570	transcription start site region 31570			263 bp upstream
Tssr31571	transcription start site region 31571			295 bp upstream
Tssr31572	transcription start site region 31572			404 bp upstream
Tssr31573	transcription start site region 31573			540 bp upstream
Tssr31574	transcription start site region 31574			601 bp upstream
Tssr31575	transcription start site region 31575			717 bp upstream