rs239103359 SNP Detail

Summary

• ID
  rs239103359
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:109376007 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATTTGAT GCTTGTCACA
  GGAGGAACAT GCTTTGGAGA CTAGGGTCTG GTAGCACTTC AGTCTTTGGA CATGTAGGTG
  CTATACTAGA GTCATGAGGC TCAGGGTAGA GCCAGGACTG TGGCTTGAGT GATGGCAGCC
  AGCATCTGTG AGTCCTGAGT GACAGCCTGG TTGGCATAGG AAATAGTGAT GTAGGTGGGT
  R
  GGGGCTGTCT TTGTACCTTT CCACTTCATT TTGCTCATTT GGGGCATTAG AGTGTTTGAA
  TAGACATCCC TTTGGATGCT TTTAGCTGTC AAAAGTGTGT GTTATTGCCT CTGCCTTGCA
  TTCTCTATAC TTTACAAATT ATCTACAAGA ATATATTACT GTCAAAACTT GAGGTGCCAG
  GCTAAGGTTC CAATGACTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320869309	CHEV_3_109271609	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239103359					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:109376007 () rs orientation: forward

Symbol	Name	Function Class
Rr583417	regulatory region 583417	1057 bp distal
Rr583418	regulatory region 583418	1108 bp distal
Rr583419	regulatory region 583419	860 bp proximal
Vav3	vav 3 oncogene	Intron