rs239046875 SNP Detail

Summary

• ID
  rs239046875
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:135369795 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCGTCGTCG TCTTCTTTCT
  TTCTTTCTTT CTTTCTTTCT TTCTTTCTTT CTTTCTTTTT TTTTTATCGA GACAGGGTCT
  CTCTGTGTAG CCCTGGCTGT CCTGGAACTC ACTTTGTAGA CCAGGCTGGC CTCGAACTCA
  GAAATCCACC TGCCTCTACC TCCCAAGTGC TGAGATTAAA GGCATGTGCC ACCACTGCCC
  R
  GCTCTATTTT CTATTACAAT ATAAATACCT GAATCTAGTA GATGAAGGCA CACTGAACAA
  TGGCTCTAAA GATGTCTACA TGCTACTCCA CAGAACCTTT CTATTCCCCA GAACCTATGC
  TTTCTGTGGC AAAAGATATA TTGCATGTGC CATCAATGTA GGACAATTAA ATGACAGGAT
  TATCCTGGAA TATCCAAGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359840552	MGP_WTSI_3_135326998	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239046875					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359840552	MGP_WTSI_3_135326998	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135369795 () rs orientation: forward

Symbol	Name	Function Class
Nfkb1	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	Intron
Rr585759	regulatory region 585759	1524 bp distal
Rr585760	regulatory region 585760	1374 bp proximal
Tssr35804	transcription start site region 35804	721 bp upstream
Tssr35805	transcription start site region 35805	1048 bp downstream
Tssr35806	transcription start site region 35806	1059 bp downstream
Tssr35807	transcription start site region 35807	1079 bp downstream
Tssr35808	transcription start site region 35808	1120 bp downstream
Tssr35809	transcription start site region 35809	1157 bp downstream
Tssr35810	transcription start site region 35810	1182 bp downstream
Tssr35811	transcription start site region 35811	1249 bp downstream
Tssr35812	transcription start site region 35812	1268 bp downstream
Tssr35813	transcription start site region 35813	1309 bp downstream
Tssr35814	transcription start site region 35814	1333 bp downstream
Tssr35815	transcription start site region 35815	1364 bp downstream
Tssr35816	transcription start site region 35816	1381 bp downstream
Tssr35817	transcription start site region 35817	1451 bp downstream
Tssr35818	transcription start site region 35818	1479 bp downstream
Tssr35819	transcription start site region 35819	1511 bp downstream