rs239021447 SNP Detail

Summary

• ID
  rs239021447
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:97977653 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCTA ATGAAATGGA TTCAAGCATG
  Y
  CAGATTCTGC AGGATATAGA CAATC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321219856	CHEV_4_97756107	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239021447					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:97977653 () rs orientation: forward

Symbol	Name	Function Class
Nfia	nuclear factor I/A	Intron
Rr367651	regulatory region 367651	1982 bp upstream
Rr595682	regulatory region 595682	1952 bp distal
Rr595683	regulatory region 595683	457 bp proximal
Rr595684	regulatory region 595684	1816 bp proximal
Rr595685	regulatory region 595685	1971 bp proximal