rs239013875 SNP Detail

Summary

• ID
  rs239013875
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:140939563 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCCTGTGT ATAATTGTGT
  GTGTGTGTAT AAAACAAAAA CAAGAGAGGG TGTGTGTGAG CAGCAGACAC CATTATGGCG
  GTACACACTT GTAATTCTAG CACCCAAGAG GCTGAGGCAA AAGGACCAGG AGTTCCCCAG
  GCCAATCTAG AGTACACAGT GAGAGCTTGT CTCCAAAAAT AGGAAATAGC AGCAGAGGAC
  S
  GAGCAGAGAA GAGGCCATGT TGTTGTTACA CATGGAGAAG GCAGTGGCAG AAACCAACCC
  GGCAGTGAGG TCGGTTATTC CAGCCTCCAC GGAAACACTT GTCCGTTGTT TGAGCCCCCA
  GTCTATGCAG TGCTATCAGA GCATTACAGT GCAAGCATTA AATGTGCAGA TTCATTTAGA
  GATTTCCAAG ATTCAAACCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363514592	MGP_WTSI_4_140768167	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239013875					SNP	G	G	G	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363514592	MGP_WTSI_4_140768167	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140939563 () rs orientation: forward

Symbol	Name	Function Class
Cplane2	ciliogenesis and planar polarity effector 2	1686 bp upstream
Gm68349	predicted gene, 68349	1926 bp upstream
Rr398649	regulatory region 398649	1589 bp downstream
Rr398650	regulatory region 398650	1566 bp upstream
Rr603685	regulatory region 603685	1436 bp distal
Rr603686	regulatory region 603686	1214 bp proximal
Tssr40035	transcription start site region 40035	1617 bp downstream
Tssr40036	transcription start site region 40036	1696 bp upstream