rs238996696 SNP Detail

Summary

• ID
  rs238996696
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:172458809 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCTTCTGT ACCCTGAGAG
  AACAAAGGTG GCTCAGGTAG GACGGATGAC CCTACATAAG GGGTGATGTC AAGGGGGCAC
  TGCTGGTGTA GGAGTGCAGC GGCCTGAGGC TGCTTGGAGG CCATGTGGCC AGGGACATGG
  GTCTCCTTCA CTGACCAGTT CTCCTCTATC ACATGTCAGG GAACAGCACT TAGAATCCCA
  Y
  CATCCTCAGG ATGACAAAGG TGTGTGCTGG AGTCCTGGCC TATCCTTCTG TTTCCCAGAA
  CTGTGACCGG AGGCCTTTCT GAACTCTAGA CACCTCATCC AAAGAACAGA AGTGGTTTTT
  TTTTTTTTTT TTTTGTTTTT TTTTTTTTTG TCTTTTCAAC CACCCAGATG TATTGGGAGT
  GCTGTGTACA TGCTATGCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352410387	MGP_WTSI_1_174561373	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238996696					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352410387	MGP_WTSI_1_174561373	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172458809 () rs orientation: forward

Symbol	Name	Function Class
Dusp23	dual specificity phosphatase 23	mRNA-UTR
Gm35601	predicted gene, 35601	1787 bp upstream
Rr396594	regulatory region 396594	1651 bp upstream
Rr423641	regulatory region 423641	1052 bp proximal
Rr423642	regulatory region 423642	1516 bp proximal
Rr423643	regulatory region 423643	1710 bp proximal
Rr423644	regulatory region 423644	1815 bp proximal
Tssr10245	transcription start site region 10245	1822 bp upstream
Tssr15247	transcription start site region 15247	1549 bp downstream
Tssr15248	transcription start site region 15248	1573 bp downstream
Tssr15249	transcription start site region 15249	1689 bp downstream