rs238978189 SNP Detail

Summary

• ID
  rs238978189
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141947093 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGACCAA GAGGAGCGGG
  CCTGGGGCAA GAGTGGGGGT GAAGGCGTGC CCCAAACCCT GGGTATCTTC TCCTGAGATA
  AAGAAGAGTG AGATCATTGT CCCACTGCCC TGGGCCTGCA TGTCCCTGCA TACAGAGCCC
  TGTGCCCCCC CCCCCCACCT TTGCCGTATC AGAGGAGGTT ATGTAGCTGG TATCGAGGTT
  W
  AACATCTTTT CCCATTATAA GGTCATTTCA GGGGCATCTG GGATTCCTCC TCATGCAAAT
  GAGGCATCCC CAGCCAATGG TGTACACTCG TCCCAGTAGC ACCTACTGAC CCCCCCCACA
  AAGATTTAAA TAGCTTTTGT TTCCCCCCAA TAAATAGAGC CAGTTCTCTG AAGTTGTTCC
  CAGGTGTGTG TTCTTTATCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321393876	CHEV_4_141775697	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238978189					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141947093 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Kazn	kazrin, periplakin interacting protein			Intron
				Noncoding-Transcript-Variant
Rr604032	regulatory region 604032			1127 bp proximal