rs238972675 SNP Detail

Summary

• ID
  rs238972675
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:78875737 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATTAATTG AAAGTTTCTT
  CAAATCAACC AGGGTCTGAT ATTTAGAGTT TCCTCCTGGG CATATTTCTA TGCTTTTTGA
  TGTTTGGAGT GGGGTTCTTG TTAAGATGAT GTAATATTGG TATTCTGTGA AGTTCAAGGA
  TCTATACCAT AACTCAAAGC ACATTTTGCC CTGCAGGACC AAATTAAAGA TGAAAGGGGA
  Y
  GAAGGGAGAA ATACTCATTG AAATATAAAT ATTTCATCTT TATTAATTCT TAAAGCAGGT
  AAGATGAATT TTAAAAGGTC TAACTGAATA GCGTTAAGTA AAATCTTGGT ATTTCTGATA
  TGAATATTTT CTCTGGAGTT GGTGGATTCT GAAATTTAAA AAAAATAGTC TGAGCTAGTC
  AAGCTGTCAT ATATGTTCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321832859	CHEV_6_78848748	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238972675					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:78875737 () rs orientation: forward

Symbol	Name	Function Class
Rr632520	regulatory region 632520	1298 bp proximal
Rr632521	regulatory region 632521	1381 bp proximal