rs238957968 SNP Detail

Summary

• ID
  rs238957968
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52947378 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGCCTTCG TGGCTTTTCT
  CTCCCTTTTT TTGAGAATTA GATGAAGTCA TCTATTCATA CACCCAGTGT ACTGACACGC
  AGTAATGAAA GAATTTGCAA CGGACGCCTC CTTGGCAATC CATGTCACTT TCTCAAGCTC
  CTCTAAGCTT GAGAAAGTGT CCTAGACTGG ATACCCGGTG GGTAGTGTGT GAGTGAGTGT
  Y
  TGTGTGTGGG TGAGTCTGGC TGCCACTGTA TAATTTTGTC TAGGCTGGTA TCTGCTACCT
  CCACATTACA TAGATATGAG ATATGTGATA GCCAGGCGGT GGTATTTAGC TACAAGTCAG
  ACCTGTTATT ATATGGCCAC CATGCTCAAT AACTGGTGAT TTGCACAAGC AGAGTTAAAA
  AACGTACGTT AACAAAGGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320766598	CHEV_3_52843879	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238957968					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52947378 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13160	CpG island 13160	1131 bp proximal
Gm42901	predicted gene 42901	within coordinates
Lhfpl6	LHFPL tetraspan subfamily member 6	1590 bp upstream
Rr576626	regulatory region 576626	678 bp proximal
Rr576627	regulatory region 576627	1482 bp proximal
Rr576628	regulatory region 576628	1637 bp proximal
Tssr29102	transcription start site region 29102	1560 bp upstream
Tssr29103	transcription start site region 29103	1673 bp upstream