rs238954562 SNP Detail

Summary

• ID
  rs238954562
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:163321768 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGTACTCT GTTACATTCA
  CTGGTATAGC CCAGTGTCTA GAACAGTACC TGGAGCTTAC AAAGCGGTTA AACAATTGTG
  TTACTGAACA AATCAATCAA TTACTGTTGG TATGGGGTCT TGCTCATGCT CAGTAAATAC
  TCTTCCCTGA GCTGTATCCC ATGTATAGAA CCATTACTAG AGCTAGAAAG ACTTGCTCAG
  S
  AGTTTAGAGA ACTGGATACT CTTTCAGAGG AATTGATTAC AGGATCAATT CCCTGTAGCT
  ACATGGCAGC TCATAACTCT AACTCCAGTC CAGGGGATCC AACGCCCTCT TTTGGCCTTA
  TGGGCACCCT GCATGCATAT GGTAATACAG GCATACATGC AGACAAAATA CCCCCATAGA
  TGATAGATAG ATAGATAGAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320603401	CHEV_2_163305584	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238954562					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163321768 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12636	CpG island 12636	1775 bp proximal
Rr569389	regulatory region 569389	666 bp proximal
Rr569390	regulatory region 569390	762 bp proximal
Rr569391	regulatory region 569391	994 bp proximal
Rr569392	regulatory region 569392	1662 bp proximal
Rr569393	regulatory region 569393	1846 bp proximal