rs238943717 SNP Detail

Summary

• ID
  rs238943717
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:141980964 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTGAAGTG TCATGATGTA
  ATTGAATTAC AATTTCACAA TAGAAAAAAA TTTTGTTTGA CAATACTGTT TTATGATATG
  TATGCTACTA GGTTATAATA TTTCTCATAT TAAATTACCT ATAGTTTCTA CAAACATATC
  ATGTTTTAAA TGCTAGGCAT AAGGCTCATG ACTACAGTTG CTGCTTGTCT GATTTGATTA
  K
  TCTCTTAAGA ATCAGAGAAG AAAGGACTCT ACCACCCTCT TGTGGTGGTT TTAATGTAAT
  GTTTTTCCCA GGAATTATTT TACAAAGAAA AGAATATTTT ATTATGAGTT TTTGAATTAT
  CTAATCATCA GCTACATTTT CTGTCCGGAT TTCAGCTTTG ACTTAGAAAT TAAGCACTTT
  GTATCTTATA AGACACTGTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320999848	CHEV_3_141938167	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238943717					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141980964 () rs orientation: forward

Symbol	Name	Function Class
Pdlim5	PDZ and LIM domain 5	Intron
Rr398078	regulatory region 398078	within coordinates
Rr586404	regulatory region 586404	427 bp distal
Rr586405	regulatory region 586405	within coordinates
Rr586406	regulatory region 586406	29 bp proximal