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rs238904438 SNP Detail
Summary
  • ID
    rs238904438
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr4:152123958 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GCGGGGTGAC GCGGTCTCGC
    GAGATCGTCC CGCCGGAGGG GTTCCGGGAC AAGCATGGCG GAGTCGGAGG TGTTACACCG
    GCGGGCTCCG AGCCGCTCTT CCTGGCTGCG GGTACGCAAA GCCCGGCCCC ACCTCCTCCT
    CAGCCGCCGG GGCCGCCGTC GGTTTGGGGT CCTGACCCGA GTCGAGCTGC GACGCCTGCG
    R
    CGGCGGCTGC TGCGGGCACA CGCGTTAGGC GGGGACTGGA AGCAGGTCGC CCCCGCGGGC
    GCGCACGTGG CGGTAAAGTG CAAACTCCGG GCCCGCAGCC GGCCGGCGCC CCGCAGCCCG
    CCCACACCGA GCGTCCCGCC CGCGCCATGC ACCGCGTCCG CGACCTGCAG CCTGCTCAAC
    CCCCGCAACC ACTCCACGCC                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ss363703563 MGP_WTSI_4_151413610 EVA_MGPV3 EVA_MGPV3 f SNP A A A A A A A A A A A A A A A A A A G A A G A A A A A A A A A A A A A A A A A A A A A A A A A G A A G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
rs238904438 SNP A A A A A A A A A A A A A A A A A A G A A G A A A A A A A A A A A A A A A A A A A A A A A A A G A A G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss363703563 MGP_WTSI_4_151413610 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr4:152123958 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi15385 CpG island 15385 within coordinates
Nol9 nucleolar protein 9 Coding-Synonymous
Noncoding-Transcript-Variant
Rr605722 regulatory region 605722 1678 bp distal
Rr605723 regulatory region 605723 155 bp distal
Rr605724 regulatory region 605724 225 bp distal
Tas1r1 taste receptor, type 1, member 1 1011 bp upstream
Tssr40490 transcription start site region 40490 145 bp downstream
Tssr40491 transcription start site region 40491 134 bp downstream
Tssr44804 transcription start site region 44804 1056 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory