rs238900229 SNP Detail

Summary

• ID
  rs238900229
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:102342742 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCATCTCA ATAAATTTGT
  GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGCATGT GTACACATGC TTGTGCAAGA
  CAGAGCTCCA CATTAAATGG CTTCCTTAAG AACTCTCTGC TTTATTTCTC AGCACCAGGT
  CTATCTGCAA ACCTGGGCTT CACCGATGTG TGTTGACGAG CTGGCCAGTG AGCTTTCGGG
  G
  CTTGCTTCAG TACTTCCGGT GCTGGAATTA CAGCTGTGAC CCTGCACTTA CTTTTTCACA
  GAGGTGCTTC AGCTCCAGAG TCTGATCTCT GTGTTTTCAC ATAAAGAATG TATATCCACA
  GGGCTATGTC TCCATTTCTC CAGTATAGTT AAGAATTGTC TTGGTCATAG TTGATGTGAA
  TCTCTTGCTG CGACTGATTT                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321233796	CHEV_4_102158150	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238900229					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:102342742 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pde4b	phosphodiesterase 4B, cAMP specific			Intron
				Noncoding-Transcript-Variant
Rr596250	regulatory region 596250			1848 bp distal
Rr596251	regulatory region 596251			474 bp distal
Rr596252	regulatory region 596252			527 bp distal
Rr596253	regulatory region 596253			342 bp distal
Rr596254	regulatory region 596254			627 bp proximal
Rr596255	regulatory region 596255			722 bp proximal