rs238882593 SNP Detail

Summary

• ID
  rs238882593
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:75848721 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTAAATCAA GTCACCAGGT
  CACTGGGAAC TGGGTACAAG TCAAGGGGAA GGGAGACACA TTTTATTGCC ACAAAAATAA
  TGTGGGCTTT CCTTTCTGTA GAAAGAAGAA GTCAGATTGG AAAAACTCCT TCACAGTGAT
  CCTCTCTCTC TTTCTTGCCT TCCTTTTTAT TAAACATAGA TTCTTTTCCA TTTATGATGA
  Y
  TTTAAGGGTT GGGTGCTATC GGCAATCATG TGTTTTCCCG TAAGGTTCTG TAATTAGTAG
  GTGACTAAGT GTTTGTCCTT GGATGGGTGG TGGCAGCAGG CATCCATCCT TTCTTCATAT
  CAGCCTTTAA ATTTTATGAC ATTATAATGC TTGATATAAT TTATATGCAT TTCTAAAAGC
  CACAGTGATT TATTTCTAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320352419	CHEV_2_75856434	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238882593					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:75848721 () rs orientation: forward

Symbol	Name	Function Class
Gm75271	predicted gene, 75271	282 bp downstream
Pde11a	phosphodiesterase 11A	Intron
Rr559634	regulatory region 559634	965 bp distal