rs238873622 SNP Detail

Summary

• ID
  rs238873622
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116454609 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACACAAAGC AAAATCCCAA
  CAACAACAAA AACATGTATC TCTTCTCAAA GTCAGAATTT GGAATGACTC TTCTGGAGGC
  TGACATGAGC TCTAAGTTTG ATCCCTACTA TCTCATCAAA AAAATATTTT ACAGAGCAAA
  CCAGACAAAA ATCCAAACAT TATAAAAGGT CTGCTCCTGC CGGGTATGGT GACGCACGCC
  K
  TTAATCCCAG CACTCGGGAG TCAGAGGCAG GCGTATTTCT GAGTTCGAGG CCAGCCTGGT
  CTACAAAGTG AGTTCCAGGA CAGCCAGGGC TATACAGAGA AACCCTGTCT CGAAAAACCA
  AAAAAAAAAA AAAAAAAAAA AAAAAAGGTC TGCTCCTTAA TTATCTTGCT TCTTGTCTTT
  TGCAAAGATT GGTCTTAAAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359358695	MGP_WTSI_3_116363878	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238873622					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359358695	MGP_WTSI_3_116363878	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116454609 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13738	CpG island 13738	810 bp proximal
Gm43191	predicted gene 43191	Intron
Mfsd14a	major facilitator superfamily domain containing 14A	Intron
Rr397966	regulatory region 397966	1540 bp upstream
Rr583758	regulatory region 583758	474 bp proximal
Rr583759	regulatory region 583759	1707 bp proximal
Tssr31364	transcription start site region 31364	801 bp upstream
Tssr35323	transcription start site region 35323	1619 bp upstream
Tssr35324	transcription start site region 35324	1132 bp downstream
Tssr35325	transcription start site region 35325	1310 bp downstream
Tssr35326	transcription start site region 35326	1577 bp downstream
Tssr35327	transcription start site region 35327	1594 bp downstream
Tssr35328	transcription start site region 35328	1611 bp downstream
Tssr35329	transcription start site region 35329	1630 bp downstream
Tssr35330	transcription start site region 35330	1683 bp downstream