rs238840920 SNP Detail

Summary

• ID
  rs238840920
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:113305944 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTAT ATACCCAATC ACTTTTACTC
  C
  TTGGTGAAGA AAGAAAAGGA CACAA                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321910506	CHEV_6_113278977	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238840920					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113305944 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17839	CpG island 17839			1615 bp distal
Ogg1	8-oxoguanine DNA-glycosylase 1			Intron
				Noncoding-Transcript-Variant
Rr636491	regulatory region 636491			1675 bp proximal
Tssr58194	transcription start site region 58194			1970 bp downstream
Tssr58195	transcription start site region 58195			1952 bp downstream
Tssr58196	transcription start site region 58196			1742 bp downstream
Tssr58197	transcription start site region 58197			1719 bp downstream