rs238818257 SNP Detail

Summary

• ID
  rs238818257
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:138611271 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATCATGAC ATTCAGGTAT
  GGCTGCATTA AGTGGACCTA ACAGATGGAA GGTCCAGGTG TCTGTTCAGG TGCCCATCCA
  GGTGTCCATC CAGGTGTCTG TGCAGGTGTC TGTGCAGGTG CTCATCCAGG TGTCCTTGCA
  GGTGTCTGTG CAGGTGCCCA TCCAGGTGTC CATGCAGGTG CCCATCCAGG TGTCCATGCA
  R
  GTGTCTGTGC AGGTGCCCAT CCAGGTATGC ATTCAGGTGT CCGTGCAGGT TAGCTGTGAG
  CCTACACAGC TGACTCGGGC TCTAAACACA GAGTCAGAAA AGAAGAGTTC AGCATGTTGG
  GATCATTAAA GGGTTCCCAG CAGGAGAGAC CTGTGGCAGA TTTTACTCCT AACTACAGCG
  GCAATACCTC AGCCATCTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	FVB/NJ	JF1/MsJ	LEWES/EiJ	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi5/Ianm	SEA/GnJ	SPRET/EiJ
ss363452789	MGP_WTSI_4_138439875	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	FVB/NJ	JF1/MsJ	LEWES/EiJ	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi5/Ianm	SEA/GnJ	SPRET/EiJ
rs238818257					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363452789	MGP_WTSI_4_138439875	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138611271 () rs orientation: forward

Symbol	Name	Function Class
Pla2g2e	phospholipase A2, group IIE	1146 bp downstream
Rr603039	regulatory region 603039	208 bp proximal
Rr603040	regulatory region 603040	522 bp proximal