rs238798821 SNP Detail

Summary

• ID
  rs238798821
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:75878178 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGTCAGAGA CCTACCTCTC CTGAAGAAGT
  GAGGAACCCT GCACTGAACT GTCAGGGTGC TTCGGTGAAG CGCGTGCTGG ATTAAATTCA
  CGGCGCCGGG TATCTATCTG CTCAACAGCT AGGATGAGGA TGCTATTGTC TGGGTGCAGT
  R
  AAGCTCTAGT GATGATTTTT ACCAAAGACT GCAATACAGC TTTACCTCAT GCTACCAGAG
  AGCACTCTTG TTCTCTCCAG AAGCCGGCTC ACTTGGCAGC CATACCCCCT TGTTAGTGAA
  ACGGGAAACC CTTCGGCAGT GTCACTGTCA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320352556	CHEV_2_75885891	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238798821					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:75878178 () rs orientation: forward

Symbol	Name	Function Class
Pde11a	phosphodiesterase 11A	Intron
Rr559637	regulatory region 559637	19 bp proximal
Rr559638	regulatory region 559638	1882 bp proximal